Execute a Slurm job locally

Source: R/local_slurm_array.R

Run a previously created slurm_job object locally instead of on a Slurm cluster

local_slurm_array(slr_job, rscript_path = NULL)

Arguments

slr_job

An object of class slurm_job.

rscript_path

The location of the Rscript command. If not specified, defaults to the location of Rscript within the R installation being run.

Details

This function is most useful for testing your function on a reduced dataset before submitting the full job to the Slurm cluster.

Call local_slurm_array on a slurm_job object created with slurm_apply(..., submit = FALSE) or slurm_map(..., submit = FALSE). The job will run serially on the local system rather than being submitted to the Slurm cluster.

Examples

if (FALSE) {
sjob <- slurm_apply(func, pars, submit = FALSE)
local_slurm_array(sjob)
func_result <- get_slurm_out(sjob, "table") # Loads output data into R.
cleanup_files(sjob)
}